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Matlab Code

Analysis files for ISSDE calculation Categories: Input_setting, Analysis_Input, Analysis_Theory_&_Simulation, Analysis_Output, Script

Input_setting:

get_input_file.m
get_n_T_for_read_data.m
get_psirz_psidr_psidz.m
get_ripple_deltarz_deltar_deltaz.m
get_xyz_vxyz.m
manipulateGfile.m
readGfile.m
MHD_input_setting:
    R_z_from_psi.m
    poloidal_theta_calculation.m
MHD_trace_input_setting
    R_phi_z_each_psi.m
    R_phi_z_pitch_energy_each_psi.m
    get_cartesian_coordinate_from_guiding_center_each_psi_mhd.m

Analysis_Input

NBI_position_distribution.m
magnetic_line_psi.m
n_T_plot.m
particle_orbit_type.m
psi_distribution_fun.m
q_profile.m
ripple_delta_engineering.m

Analysis_Theory_&_Simulation:

magnetic_island_width_calculation.m

Analysis_Output:

poincare_map_plot.m
magnetic_trace.m

Script:

run_diff_E_alpha_mhd_phase_space.sh

C++ Code

ISSDE flow chart

ISSDE structure

Git branch

ISSDE Normalization

The normalization of the program is based on the mass of electron m_{e}=9.10938356\times10^{-31}\rm{kg}, charge of electron q=1.602176565\times10^{-19}\rm{C}, the speed of light c=3.0\times10^{8}\rm{m/s} and the vacuum dielectric constant \epsilon_0=8.854187817\times 10^{-12}. The physical normalized physics quantities are m_{e},e,c,\varepsilon_{0}, the other quantities are as follow

variable	symbols	unit
mass	m	m_e
charge	q	|e|
velocity	\bf{v}	c
position	\bf{x}	\frac{e^2}{m_e c^2 \varepsilon_0}
time	t	\frac{e^2}{m_e c^3 \varepsilon_0}
eletric field	\bf{E}	\frac{m_e ^2 e^4 \varepsilon_0}{|e|^3}
magnetic field	\bf{B}	\frac{m_e ^2 e^3 \varepsilon_0}{|e|^3}
magnetic flux	\psi	\frac{|e|}{c\varepsilon_0}
Derivative of magnetic flux	\partial\psi/\partial R	m_ec

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